Hi,
I also use a controller and like that it turns off the c02 at a certain level. If working properly there won't be a huge drop in c02 levels. Also convserves c02.
I turn off my c02 and lights for about 90 minutes each day in the afternoon (3-6) to allow the fish some natural daylight and also have the lights on later at night when I am home. My DC color doesn't change much and the plants all pearl within minutes of lights back on even with this 3 hours rest period.
That being said, it may be optimal to have continuous c02 for the plants, as long as the fish are not affected adversely.
You can remove the ph controller once you are happy with the c02 flow/content/DC color/ etc. I know other folks have done it.
However, IMO you should at least hook it to the light timer so as to TURN OFF the c02 when the lights are off. There is no need for c02 at night as the plants don't assimilate c02 (no photosynthesis) and give off c02 as well as the fish. Keeping it on 24/7 is not necessary.
Also, the controller is a quick way to double check that your c02 is where you had it. Keep in mind that the DC takes several hours to equate with the tank water and show a color. Ph probe is dynamic and real time. Leaks, non-precision needle valves, etc all can affect the c02 flow so bad things can happen quickly.
C02 and ph related swings are normal in c02/planted tanks, as most of us turn off the co2 at some point. Since my DC is blue in the am (ph probe shows 7.5) and green several hours later (probe shows 6.3), and the tank has no issues, algae, etc, I feel that these swings are okay. I have to think that others running c02 also have swings.
If I am wrong in any of this, I know others will jump in to help
I did the AM 1000 mod as well for my 180 and it also worked well
Hope this helps.
Start browsing the threads, as these topics come up all the time.........
Happy reading.